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Anxiety (or
stress) disorders are the most common mental illness in
Fig 1 shows
how stress triggers a sequence of events
within the brain. First, highly tuned
stress sensors transmit signals to distinct brain circuits, which transfer
this information to various brain regions to activate selected genes within
those regions. The signals are also sent to CRH neurons, a distinct
population of nerve cells that respond to stress by releasing hormones and by
turning on gene sequences to make new hormones. The relative simplicity of
this figure belies the breadth and depth of data in this field. For example,
the specific problem we tackle in this application is: Does every type of stress
stimulus recruit the same set of brain circuits and activate the same genes,
or do such circuits and genes vary across different stressors? An
answer to this question helps clinicians and drug manufacturers to develop better
treatments and drugs for stress disorders.Â
This question can be answered by integrating information from each stage of this sequence to
assess how stress machinery is engaged for a
particular stressor.
We propose Sangam
(a Tamil word for “a symposium, a meeting or a council of scholarsâ€; also an
Urdu/Hindi word denoting “river deltaâ€) as an end-to-end system to address
this challenge. Sangam provides a what-oriented
interface to facilitate the seamless, rapid integration of different data
sources using the context provided by local databases of scientific data
concerning brain responses to stress, as outlined in Fig 1. It provides a
graphical interface for use by a neuroscientist working in this field. Sangam demonstrates the utility of Web Services, WSE 2.0,
Microsoft .NET, Proteus, and NeuroScholar for
scientific client applications. The broader impact of
this activity is multi-fold: 1. It demonstrates the feasibility of automatic
integration of diverse data sources for a specific discipline. Â 2. It produces the fundamental computer science
research results that enable realistic prototypes. Â 3. It provides a toolset that will be immediately
useful to biomedical scientists within other disciplines. Â 4.
Perhaps most
importantly, it could provide a catalyst for developers throughout biomedical
informatics to build interoperability into their systems using Web Services. Â
Interoperability has always been emphasized by funding agencies as very
desirable and yet, very few online systems can run queries remotely (see the
Society for Neuroscience's ‘database gateway’, http://big.sfn.org/NDG/site/ for a list of 79 examples).
Since Sangam
offers the possibility of providing seamless interoperability between Web
Service enabled systems, and the technical overhead of implementing Web
Services is small, our work could conceivably set a new standard for building
interoperability into biomedical informatics systems. We set an example by writing mediators that
convert those data sets required by our eScience
application into WSE compliant Web Services. |
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